CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr18.118 rna-evm.model.Chr18.118 Chr18 5741061 5766857 uncharacterized protein nan K22023
gene-evm.TU.Chr18.1180 rna-evm.model.Chr18.1180 Chr18 44772922 44779118 PREDICTED: Plasminogen nan K01315
gene-evm.TU.Chr18.1182 rna-evm.model.Chr18.1182 Chr18 44813920 44815182 uncharacterized protein nan nan
gene-evm.TU.Chr18.1183 rna-evm.model.Chr18.1183 Chr18 44820569 44843334 uncharacterized protein nan K24909
gene-evm.TU.Chr18.1184 rna-evm.model.Chr18.1184 Chr18 44850571 44866819 PREDICTED: Fibropellin-1 GO:0005509 K06839
gene-evm.TU.Chr18.1185 rna-evm.model.Chr18.1185 Chr18 44907411 44908403 PREDICTED: Mariner Mos1 transposase nan K07494
gene-evm.TU.Chr18.1187 rna-evm.model.Chr18.1187 Chr18 44915885 44916112 uncharacterized protein nan nan
gene-evm.TU.Chr18.1189 rna-evm.model.Chr18.1189 Chr18 45003707 45006432 PREDICTED: Transposon Tf2-6 polyprotein nan K06245
gene-evm.TU.Chr18.119 rna-evm.model.Chr18.119 Chr18 5768796 5776451 PREDICTED: A disintegrin and metalloproteinase with thrombospondin motifs 17 nan K08621
gene-evm.TU.Chr18.1192 rna-evm.model.Chr18.1192 Chr18 45127616 45202808 uncharacterized protein nan nan

For more detailed data, you can explore the Download section to access the full dataset.