CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr18.117 rna-evm.model.Chr18.117 Chr18 5727259 5727615 PREDICTED: Transposable element Tc1 transposase GO:0003677;GO:0006313;GO:0015074 nan
gene-evm.TU.Chr18.1170 rna-evm.model.Chr18.1170 Chr18 44441079 44452486 PREDICTED: Cardioacceleratory peptide receptor GO:0004930;GO:0005000;GO:0007186;GO:0016020 K08376
gene-evm.TU.Chr18.1171 rna-evm.model.Chr18.1171 Chr18 44506546 44507299 PREDICTED: Tigger transposable element-derived protein 6 nan K11496
gene-evm.TU.Chr18.1172 rna-evm.model.Chr18.1172 Chr18 44509509 44518139 PREDICTED: Chitin synthase chs-2 GO:0016758 K00698
gene-evm.TU.Chr18.1173 rna-evm.model.Chr18.1173 Chr18 44520055 44534088 PREDICTED: Chitin synthase chs-2 GO:0016758 K00698
gene-evm.TU.Chr18.1175 rna-evm.model.Chr18.1175 Chr18 44588066 44663911 PREDICTED: Phosphatidylcholine translocator ABCB4 GO:0005524;GO:0016020;GO:0016887;GO:0042626;GO:0055085 K05658
gene-evm.TU.Chr18.1176 rna-evm.model.Chr18.1176 Chr18 44688353 44689279 PREDICTED: oxysterol-binding protein-related protein 9/10/11 nan K22870
gene-evm.TU.Chr18.1177 rna-evm.model.Chr18.1177 Chr18 44689312 44689938 PREDICTED: phospholipid-translocating ATPase [EC:7.6.2.1] nan K22870
gene-evm.TU.Chr18.1178 rna-evm.model.Chr18.1178.1 Chr18 44693672 44726318 PREDICTED: Hemicentin-1 nan K16857
gene-evm.TU.Chr18.1179 rna-evm.model.Chr18.1179 Chr18 44734772 44765696 PREDICTED: Chitin synthase chs-2 GO:0016758 K00698

For more detailed data, you can explore the Download section to access the full dataset.