CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr18.1151 rna-evm.model.Chr18.1151 Chr18 42888879 42889668 PREDICTED: Snaclec coagulation factor IX/factor X-binding protein subunit A nan K10064
gene-evm.TU.Chr18.1152 rna-evm.model.Chr18.1152 Chr18 42928179 42932710 PREDICTED: NAD(P)H-hydrate epimerase nan K17759
gene-evm.TU.Chr18.1155 rna-evm.model.Chr18.1155 Chr18 43118220 43155075 PREDICTED: Replicase polyprotein 1ab GO:0005515 K11428
gene-evm.TU.Chr18.1156 rna-evm.model.Chr18.1156 Chr18 43213376 43247093 PREDICTED: NAD(P)H-hydrate epimerase nan K17759
gene-evm.TU.Chr18.1157 rna-evm.model.Chr18.1157 Chr18 43301671 43368000 PREDICTED: NAD(P)H-hydrate epimerase nan K17759
gene-evm.TU.Chr18.1158 rna-evm.model.Chr18.1158 Chr18 43434207 43445819 PREDICTED: Glutamate receptor ionotropic, kainate 3 GO:0004970;GO:0005216;GO:0006811;GO:0016020;GO:0038023 K05198
gene-evm.TU.Chr18.116 rna-evm.model.Chr18.116 Chr18 5692492 5714206 PREDICTED: Probable hemoglobin and hemoglobin-haptoglobin-binding protein 3 nan K22018
gene-evm.TU.Chr18.1163 rna-evm.model.Chr18.1163 Chr18 43630924 43659435 PREDICTED: Histone-lysine N-methyltransferase PRDM9 GO:0005515 K20796
gene-evm.TU.Chr18.1167 rna-evm.model.Chr18.1167 Chr18 43889683 43891500 uncharacterized protein nan K04860
gene-evm.TU.Chr18.1168 rna-evm.model.Chr18.1168 Chr18 43891564 43961723 PREDICTED: Voltage-dependent calcium channel subunit alpha-2/delta-3 nan K04860

For more detailed data, you can explore the Download section to access the full dataset.