CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr18.1135 rna-evm.model.Chr18.1135 Chr18 42452757 42457881 PREDICTED: Carcinoembryonic antigen-related cell adhesion molecule 20 nan K06499
gene-evm.TU.Chr18.1136 rna-evm.model.Chr18.1136 Chr18 42470007 42679040 PREDICTED: Prolow-density lipoprotein receptor-related protein 1 GO:0005509;GO:0005515 K04550
gene-evm.TU.Chr18.1137 rna-evm.model.Chr18.1137 Chr18 42700231 42711734 PREDICTED: 2',3'-cyclic-nucleotide 3'-phosphodiesterase GO:0004113;GO:0009214;GO:0016020 K01121
gene-evm.TU.Chr18.1140 rna-evm.model.Chr18.1140 Chr18 42750939 42753472 uncharacterized protein nan nan
gene-evm.TU.Chr18.1142 rna-evm.model.Chr18.1142 Chr18 42775692 42803239 PREDICTED: Fibropellin-3 GO:0005509 K06052
gene-evm.TU.Chr18.1143 rna-evm.model.Chr18.1143 Chr18 42807989 42808183 PREDICTED: histone-lysine N-methyltransferase SETMAR [EC:2.1.1.43] nan nan
gene-evm.TU.Chr18.1145 rna-evm.model.Chr18.1145 Chr18 42824309 42824864 PREDICTED: Histone-lysine N-methyltransferase SETMAR nan nan
gene-evm.TU.Chr18.1149 rna-evm.model.Chr18.1149 Chr18 42863151 42869574 PREDICTED: mannose receptor, C type nan K06721
gene-evm.TU.Chr18.115 rna-evm.model.Chr18.115 Chr18 5583109 5690895 uncharacterized protein nan K22023
gene-evm.TU.Chr18.1150 rna-evm.model.Chr18.1150 Chr18 42875970 42877413 PREDICTED: C-type lectin mannose-binding isoform nan K10063

For more detailed data, you can explore the Download section to access the full dataset.