CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr18.1124 rna-evm.model.Chr18.1124.1 Chr18 42027168 42074309 PREDICTED: Titin nan K12567
gene-evm.TU.Chr18.1124_evm.TU.Chr18.1125 rna-evm.model.Chr18.1124_evm.model.Chr18.1125 Chr18 42027168 42109327 PREDICTED: Rab effector MyRIP GO:0006886;GO:0031267 K22237
gene-evm.TU.Chr18.1126 rna-evm.model.Chr18.1126 Chr18 42174924 42182948 PREDICTED: Protein PTHB1 GO:0034464 K19398
gene-evm.TU.Chr18.1128 rna-evm.model.Chr18.1128 Chr18 42251170 42291129 PREDICTED: AP-3 complex subunit beta-2 GO:0006886;GO:0016192;GO:0030117 K12397
gene-evm.TU.Chr18.1129 rna-evm.model.Chr18.1129 Chr18 42328533 42389143 PREDICTED: E3 ubiquitin-protein ligase RNF213 GO:0004842;GO:0005524;GO:0016887 K22754
gene-evm.TU.Chr18.113 rna-evm.model.Chr18.113 Chr18 5408829 5534800 PREDICTED: Anion exchange protein 2 GO:0005452;GO:0006820;GO:0008509;GO:0016020;GO:0016020 K13855
gene-evm.TU.Chr18.1130 rna-evm.model.Chr18.1130 Chr18 42393621 42394145 uncharacterized protein nan nan
gene-evm.TU.Chr18.1131 rna-evm.model.Chr18.1131 Chr18 42394713 42395114 PREDICTED: KRAB domain-containing zinc finger protein nan K07499
gene-evm.TU.Chr18.1132 rna-evm.model.Chr18.1132 Chr18 42395403 42395678 PREDICTED: Transposable element Tc3 transposase nan K07494
gene-evm.TU.Chr18.1133 rna-evm.model.Chr18.1133 Chr18 42405158 42419600 PREDICTED: viral Ubiquitin GO:0005515 K05791

For more detailed data, you can explore the Download section to access the full dataset.