CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr18.111 rna-evm.model.Chr18.111 Chr18 5205129 5206346 PREDICTED: 39S ribosomal protein L4, mitochondrial GO:0003735;GO:0005840;GO:0006412 K02926
gene-evm.TU.Chr18.1110 rna-evm.model.Chr18.1110 Chr18 41704128 41707316 PREDICTED: Transmembrane protein 45B nan nan
gene-evm.TU.Chr18.1112 rna-evm.model.Chr18.1112 Chr18 41780565 41785141 PREDICTED: Zinc finger and SCAN domain-containing protein 22 GO:0003676 K09191
gene-evm.TU.Chr18.1116 rna-evm.model.Chr18.1116 Chr18 41837555 41839841 uncharacterized protein nan nan
gene-evm.TU.Chr18.1117 rna-evm.model.Chr18.1117 Chr18 41842388 41867558 PREDICTED: MAGUK p55 subfamily member 7 GO:0005515 K24049
gene-evm.TU.Chr18.1118 rna-evm.model.Chr18.1118 Chr18 41930487 41942159 uncharacterized protein nan nan
gene-evm.TU.Chr18.1119_evm.TU.Chr18.1120 rna-evm.model.Chr18.1119_evm.model.Chr18.1120 Chr18 41946371 41991484 PREDICTED: intracellular protein transport protein USO1-like nan K03529
gene-evm.TU.Chr18.112 rna-evm.model.Chr18.112 Chr18 5222298 5381812 PREDICTED: Glycerol-3-phosphate dehydrogenase, mitochondrial GO:0004368;GO:0005509;GO:0006072;GO:0009331;GO:0016491;GO:0055114 K00111
gene-evm.TU.Chr18.1122 rna-evm.model.Chr18.1122 Chr18 41997911 42004286 PREDICTED: podocalyxin-like 2 nan nan
gene-evm.TU.Chr18.1123 rna-evm.model.Chr18.1123 Chr18 41994020 42010326 PREDICTED: Cysteine/serine-rich nuclear protein 2 nan K17494

For more detailed data, you can explore the Download section to access the full dataset.