CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr18.1059 rna-evm.model.Chr18.1059 Chr18 39998958 40044937 PREDICTED: Receptor-type tyrosine-protein phosphatase S GO:0005515 K05125
gene-evm.TU.Chr18.106 rna-evm.model.Chr18.106 Chr18 4900565 4994727 PREDICTED: WD repeat-containing protein 87 GO:0005515 K14262
gene-evm.TU.Chr18.1061 rna-evm.model.Chr18.1061 Chr18 40095052 40099281 PREDICTED: a disintegrin and metalloproteinase with thrombospondin motifs 6 [EC:3.4.24.-] nan nan
gene-evm.TU.Chr18.1063 rna-evm.model.Chr18.1063 Chr18 40124426 40156823 PREDICTED: DnaJ homolog subfamily C member 10 GO:0045454 K09530
gene-evm.TU.Chr18.1065 rna-evm.model.Chr18.1065 Chr18 40219924 40223792 PREDICTED: gamma-tubulin complex component 6 nan K10888
gene-evm.TU.Chr18.1066 rna-evm.model.Chr18.1066 Chr18 40223903 40224544 uncharacterized protein nan K06770
gene-evm.TU.Chr18.1069 rna-evm.model.Chr18.1069 Chr18 40284664 40285041 PREDICTED: Enamelin nan K03693
gene-evm.TU.Chr18.107 rna-evm.model.Chr18.107 Chr18 5000756 5014683 PREDICTED: tRNA wybutosine-synthesizing protein 5 GO:0000049;GO:0016706;GO:0031591 K18066
gene-evm.TU.Chr18.1070 rna-evm.model.Chr18.1070 Chr18 40285193 40287493 PREDICTED: Zinc finger protein 2 GO:0003676 K09191
gene-evm.TU.Chr18.1072 rna-evm.model.Chr18.1072 Chr18 40304905 40334263 PREDICTED: Disintegrin and metalloproteinase domain-containing protein 17 nan K06059

For more detailed data, you can explore the Download section to access the full dataset.