CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr18.1048 rna-evm.model.Chr18.1048 Chr18 39560473 39568273 uncharacterized protein nan K17903
gene-evm.TU.Chr18.105 rna-evm.model.Chr18.105 Chr18 4888101 4891334 PREDICTED: E3 ubiquitin-protein ligase TRIM33 GO:0008270 K12026
gene-evm.TU.Chr18.1050 rna-evm.model.Chr18.1050 Chr18 39629466 39632599 PREDICTED: NLR family CARD domain-containing protein 3 nan nan
gene-evm.TU.Chr18.1051 rna-evm.model.Chr18.1051 Chr18 39645142 39648138 PREDICTED: Uncharacterized protein KIAA1958 nan K21754
gene-evm.TU.Chr18.1052 rna-evm.model.Chr18.1052 Chr18 39670167 39679857 PREDICTED: organic solute transporter subunit alpha GO:0003676;GO:0008270 K09250
gene-evm.TU.Chr18.1053 rna-evm.model.Chr18.1053 Chr18 39729705 39743240 PREDICTED: tripartite motif-containing protein 2/3 nan K10642
gene-evm.TU.Chr18.1054 rna-evm.model.Chr18.1054 Chr18 39798428 39799892 PREDICTED: Transcription intermediary factor 1-alpha GO:0008270 K12026
gene-evm.TU.Chr18.1055 rna-evm.model.Chr18.1055 Chr18 39812872 39844180 PREDICTED: Next to BRCA1 gene 1 protein GO:0000407;GO:0005515;GO:0008270;GO:0016236;GO:0043130 K17987
gene-evm.TU.Chr18.1056 rna-evm.model.Chr18.1056 Chr18 39848941 39865082 PREDICTED: Transcription factor Sp3 GO:0003676 K09193
gene-evm.TU.Chr18.1057 rna-evm.model.Chr18.1057 Chr18 39883020 39944379 PREDICTED: Collagen alpha-1(XXIV) chain GO:0005515 K06823

For more detailed data, you can explore the Download section to access the full dataset.