CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr17.99 rna-evm.model.Chr17.99 Chr17 3336187 3338725 PREDICTED: Orexin receptor type 2 GO:0004930;GO:0007186;GO:0016020 K04238
gene-evm.TU.Chr17.990 rna-evm.model.Chr17.990 Chr17 28983558 29030024 PREDICTED: Retinal-specific ATP-binding cassette transporter GO:0005215;GO:0006869;GO:0016020;GO:0042626;GO:0055085 K05641
gene-evm.TU.Chr17.993 rna-evm.model.Chr17.993 Chr17 29079684 29080663 PREDICTED: titin [EC:2.7.11.1] nan K05726
gene-evm.TU.Chr17.995 rna-evm.model.Chr17.995 Chr17 29321849 29322478 PREDICTED: Membrane progestin receptor beta GO:0016020 K25040
gene-evm.TU.Chr17.996 rna-evm.model.Chr17.996 Chr17 29322629 29333418 PREDICTED: Membrane progestin receptor alpha GO:0016020 K25040
gene-evm.TU.Chr17.997 rna-evm.model.Chr17.997 Chr17 29350326 29351961 PREDICTED: Membrane progestin receptor alpha-B GO:0016020 K25040
gene-evm.TU.Chr18.10 rna-evm.model.Chr18.10 Chr18 137431 137874 PREDICTED: Putative nuclease HARBI1 nan K23222
gene-evm.TU.Chr18.1001 rna-evm.model.Chr18.1001 Chr18 37987427 38005622 PREDICTED: Monocarboxylate transporter 12 GO:0016020;GO:0055085 K08180
gene-evm.TU.Chr18.1004 rna-evm.model.Chr18.1004 Chr18 38055912 38060473 uncharacterized protein nan nan
gene-evm.TU.Chr18.1005 rna-evm.model.Chr18.1005 Chr18 38083998 38084984 uncharacterized protein nan K13880

For more detailed data, you can explore the Download section to access the full dataset.