CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr18.1038 rna-evm.model.Chr18.1038 Chr18 39287649 39289976 uncharacterized protein nan K10989
gene-evm.TU.Chr18.1039 rna-evm.model.Chr18.1039 Chr18 39298588 39330542 PREDICTED: Kinesin-like protein KIF9 GO:0003777;GO:0005524;GO:0007018;GO:0008017 K10397
gene-evm.TU.Chr18.104 rna-evm.model.Chr18.104 Chr18 4876713 4885586 PREDICTED: Chaperone protein DnaJ GO:0008270 K19370
gene-evm.TU.Chr18.1041 rna-evm.model.Chr18.1041 Chr18 39410107 39413928 PREDICTED: Protein N-lysine methyltransferase METTL21A nan K21804
gene-evm.TU.Chr18.1042 rna-evm.model.Chr18.1042 Chr18 39421233 39431838 PREDICTED: Tudor and KH domain-containing protein GO:0003676;GO:0003723 K18406
gene-evm.TU.Chr18.1043 rna-evm.model.Chr18.1043 Chr18 39434067 39439916 PREDICTED: lymphocyte antigen 6 complex locus protein D/E/G6/H nan K06846
gene-evm.TU.Chr18.1044 rna-evm.model.Chr18.1044 Chr18 39451702 39499079 PREDICTED: Alpha-catulin GO:0007155;GO:0007266;GO:0045296;GO:0051015 K05691
gene-evm.TU.Chr18.1045 rna-evm.model.Chr18.1045 Chr18 39509098 39512892 PREDICTED: Integrase/recombinase xerD homolog GO:0003677;GO:0006310;GO:0015074 K04763
gene-evm.TU.Chr18.1046 rna-evm.model.Chr18.1046 Chr18 39522477 39535742 PREDICTED: DnaJ homolog subfamily C member 22 nan K19370
gene-evm.TU.Chr18.1047 rna-evm.model.Chr18.1047 Chr18 39536041 39540567 PREDICTED: DnaJ homolog subfamily C member 27 GO:0003924;GO:0005525 K19372

For more detailed data, you can explore the Download section to access the full dataset.