CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr18.1023 rna-evm.model.Chr18.1023 Chr18 38728259 38767661 PREDICTED: Nephrocystin-3 GO:0005515 K19360
gene-evm.TU.Chr18.1024 rna-evm.model.Chr18.1024 Chr18 38794973 38800160 PREDICTED: serine protease inhibitor Cvsi-2-like nan K06252
gene-evm.TU.Chr18.1027 rna-evm.model.Chr18.1027 Chr18 38867172 38895516 PREDICTED: Ladderlectin nan K10059
gene-evm.TU.Chr18.1029 rna-evm.model.Chr18.1029 Chr18 39097677 39108438 PREDICTED: leucine-rich repeat protein SHOC2 nan nan
gene-evm.TU.Chr18.103 rna-evm.model.Chr18.103 Chr18 4872833 4876035 PREDICTED: tripartite motif-containing protein 56 [EC:2.3.2.27] nan K12026
gene-evm.TU.Chr18.1030 rna-evm.model.Chr18.1030 Chr18 39133630 39138928 PREDICTED: Receptor tyrosine-protein kinase erbB-3 GO:0004714;GO:0005524;GO:0006468;GO:0007169;GO:0016020 K04361
gene-evm.TU.Chr18.1031 rna-evm.model.Chr18.1031 Chr18 39144981 39163255 PREDICTED: Golgi reassembly-stacking protein 2 nan K26797
gene-evm.TU.Chr18.1033 rna-evm.model.Chr18.1033 Chr18 39168786 39195630 PREDICTED: Pejvakin nan K22147
gene-evm.TU.Chr18.1035 rna-evm.model.Chr18.1035 Chr18 39242002 39247919 PREDICTED: DNA transposase THAP9 [EC:2.7.7.-] nan K23209
gene-evm.TU.Chr18.1036 rna-evm.model.Chr18.1036 Chr18 39248313 39252635 PREDICTED: ATP-dependent DNA helicase PIF1 GO:0000723;GO:0003678;GO:0006281 K15255

For more detailed data, you can explore the Download section to access the full dataset.