CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr17.978 rna-evm.model.Chr17.978 Chr17 28573763 28578002 PREDICTED: NLR family CARD domain-containing protein 3 nan K22512
gene-evm.TU.Chr17.979 rna-evm.model.Chr17.979 Chr17 28584027 28609958 PREDICTED: Cadherin EGF LAG seven-pass G-type receptor 2 GO:0005509;GO:0007156;GO:0016020 K16506
gene-evm.TU.Chr17.98 rna-evm.model.Chr17.98 Chr17 3319854 3331406 PREDICTED: Adhesive plaque matrix protein nan K23831
gene-evm.TU.Chr17.981 rna-evm.model.Chr17.981 Chr17 28695519 28711028 uncharacterized protein nan nan
gene-evm.TU.Chr17.982_evm.TU.Chr17.984 rna-evm.model.Chr17.982_evm.model.Chr17.984 Chr17 28741446 28836053 PREDICTED: epsin nan K20555
gene-evm.TU.Chr17.983 rna-evm.model.Chr17.983 Chr17 28761819 28762916 PREDICTED: Transposable element Tc1 transposase GO:0003677;GO:0006313;GO:0015074 K07494
gene-evm.TU.Chr17.985 rna-evm.model.Chr17.985 Chr17 28849263 28862894 uncharacterized protein nan nan
gene-evm.TU.Chr17.987 rna-evm.model.Chr17.987 Chr17 28965988 28967492 PREDICTED: Retinal-specific ATP-binding cassette transporter GO:0005524;GO:0016020;GO:0016887;GO:0042626;GO:0055085 K05641
gene-evm.TU.Chr17.988 rna-evm.model.Chr17.988 Chr17 28980562 28982555 uncharacterized protein nan K05641
gene-evm.TU.Chr17.989 rna-evm.model.Chr17.989 Chr17 28982558 28983537 PREDICTED: ATP-binding cassette sub-family A member 7 GO:0016020;GO:0042626;GO:0055085 K05641

For more detailed data, you can explore the Download section to access the full dataset.