CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr17.968 rna-evm.model.Chr17.968 Chr17 28309642 28310434 PREDICTED: necdin nan K19755
gene-evm.TU.Chr17.969 rna-evm.model.Chr17.969.1 Chr17 28339929 28347797 PREDICTED: YTH domain-containing family protein 1 GO:0003723 K20102
gene-evm.TU.Chr17.97 rna-evm.model.Chr17.97 Chr17 3299684 3315246 uncharacterized protein nan nan
gene-evm.TU.Chr17.970 rna-evm.model.Chr17.970 Chr17 28352934 28354113 PREDICTED: Putative ZDHHC-type palmitoyltransferase 4 nan K18932
gene-evm.TU.Chr17.971 rna-evm.model.Chr17.971 Chr17 28360291 28383937 uncharacterized protein nan K06402
gene-evm.TU.Chr17.972 rna-evm.model.Chr17.972 Chr17 28391595 28412419 PREDICTED: NAD(P) transhydrogenase, mitochondrial nan K00323
gene-evm.TU.Chr17.973 rna-evm.model.Chr17.973 Chr17 28412691 28428392 PREDICTED: Isocitrate dehydrogenase [NADP], mitochondrial GO:0004450;GO:0006102;GO:0016616;GO:0055114 K00031
gene-evm.TU.Chr17.974 rna-evm.model.Chr17.974.2 Chr17 28428938 28453272 PREDICTED: Kynureninase GO:0005737;GO:0006569;GO:0009435;GO:0030170;GO:0030429 K01556
gene-evm.TU.Chr17.976 rna-evm.model.Chr17.976 Chr17 28459337 28467969 PREDICTED: AAC-rich mRNA clone AAC4 protein nan nan
gene-evm.TU.Chr17.977 rna-evm.model.Chr17.977 Chr17 28492547 28579572 PREDICTED: Oxysterol-binding protein-related protein 1 GO:0005515 K20174

For more detailed data, you can explore the Download section to access the full dataset.