CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr17.958 rna-evm.model.Chr17.958 Chr17 28109679 28110682 PREDICTED: D-erythrulose reductase nan K03331
gene-evm.TU.Chr17.959 rna-evm.model.Chr17.959 Chr17 28118228 28123832 PREDICTED: Biogenesis of lysosome-related organelles complex 1 subunit 5 GO:0030133;GO:0031083 K20187
gene-evm.TU.Chr17.960 rna-evm.model.Chr17.960 Chr17 28127556 28144922 PREDICTED: Zinc metalloproteinase dpy-31 GO:0004222;GO:0006508;GO:0008237;GO:0008270 K08076
gene-evm.TU.Chr17.961 rna-evm.model.Chr17.961 Chr17 28155815 28157437 PREDICTED: Solute carrier family 25 member 51 nan K26152
gene-evm.TU.Chr17.962 rna-evm.model.Chr17.962 Chr17 28178105 28183434 uncharacterized protein nan nan
gene-evm.TU.Chr17.963 rna-evm.model.Chr17.963 Chr17 28192514 28229619 PREDICTED: WASH complex subunit 2 nan K18462
gene-evm.TU.Chr17.964 rna-evm.model.Chr17.964 Chr17 28242800 28246861 PREDICTED: ninein nan K21137
gene-evm.TU.Chr17.965 rna-evm.model.Chr17.965 Chr17 28248709 28256389 PREDICTED: Carbohydrate sulfotransferase 15 GO:0008146 K08106
gene-evm.TU.Chr17.966 rna-evm.model.Chr17.966 Chr17 28263680 28284159 PREDICTED: Protein unc-45 homolog B GO:0005515 K21991
gene-evm.TU.Chr17.967 rna-evm.model.Chr17.967 Chr17 28286426 28309349 PREDICTED: kinesin family member 13 nan K23468

For more detailed data, you can explore the Download section to access the full dataset.