CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr17.947 rna-evm.model.Chr17.947 Chr17 28052705 28055390 uncharacterized protein nan K01994
gene-evm.TU.Chr17.948 rna-evm.model.Chr17.948 Chr17 28055796 28056412 PREDICTED: THAP domain-containing protein 11 nan nan
gene-evm.TU.Chr17.949 rna-evm.model.Chr17.949 Chr17 28058061 28066393 PREDICTED: THAP domain-containing protein 4 GO:0003676 K23204
gene-evm.TU.Chr17.95 rna-evm.model.Chr17.95 Chr17 3265073 3279487 PREDICTED: Zinc finger protein 69 homolog GO:0003676 K09228
gene-evm.TU.Chr17.951 rna-evm.model.Chr17.951 Chr17 28071669 28074002 PREDICTED: starch-binding domain-containing protein 1 nan nan
gene-evm.TU.Chr17.953 rna-evm.model.Chr17.953 Chr17 28076488 28078055 PREDICTED: Putative nuclease HARBI1 nan K23222
gene-evm.TU.Chr17.954 rna-evm.model.Chr17.954 Chr17 28079366 28081583 PREDICTED: Trihelix transcription factor GT-2 nan K20902
gene-evm.TU.Chr17.955 rna-evm.model.Chr17.955 Chr17 28083737 28091518 uncharacterized protein nan K03489
gene-evm.TU.Chr17.956 rna-evm.model.Chr17.956 Chr17 28093542 28105533 PREDICTED: Alpha-(1,6)-fucosyltransferase nan K00717
gene-evm.TU.Chr17.957 rna-evm.model.Chr17.957 Chr17 28106001 28108640 uncharacterized protein nan K19929

For more detailed data, you can explore the Download section to access the full dataset.