CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr17.934 rna-evm.model.Chr17.934 Chr17 27762634 27780789 uncharacterized protein nan nan
gene-evm.TU.Chr17.936 rna-evm.model.Chr17.936 Chr17 27807898 27811411 uncharacterized protein nan K21671
gene-evm.TU.Chr17.94 rna-evm.model.Chr17.94 Chr17 3256868 3258098 PREDICTED: Cholecystokinin receptor GO:0004930;GO:0007186;GO:0016020 K04194
gene-evm.TU.Chr17.940 rna-evm.model.Chr17.940 Chr17 27930727 27934443 PREDICTED: Gamma-aminobutyric acid type B receptor subunit 1 GO:0004965;GO:0007186;GO:0016020 K04615
gene-evm.TU.Chr17.941 rna-evm.model.Chr17.941 Chr17 27934965 27945313 PREDICTED: Gamma-aminobutyric acid type B receptor subunit 2 GO:0004930;GO:0004965;GO:0007186;GO:0016020 K04615
gene-evm.TU.Chr17.942 rna-evm.model.Chr17.942 Chr17 27951488 27965583 PREDICTED: Cytochrome P450 3A24 GO:0005506;GO:0016705;GO:0020037;GO:0055114 K07424
gene-evm.TU.Chr17.943 rna-evm.model.Chr17.943 Chr17 27969990 27975598 PREDICTED: Perlucin-like protein nan K06468
gene-evm.TU.Chr17.944 rna-evm.model.Chr17.944 Chr17 28004544 28021480 PREDICTED: Adenosine deaminase GO:0019239 K01488
gene-evm.TU.Chr17.945 rna-evm.model.Chr17.945 Chr17 28021828 28031661 PREDICTED: Ubiquinol-cytochrome-c reductase complex assembly factor 1 nan K17662
gene-evm.TU.Chr17.946 rna-evm.model.Chr17.946 Chr17 28033160 28046149 PREDICTED: Lipid droplet-associated hydrolase nan K14263

For more detailed data, you can explore the Download section to access the full dataset.