CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr17.925 rna-evm.model.Chr17.925 Chr17 27529657 27552040 PREDICTED: C-X-C chemokine receptor type 5 GO:0004930;GO:0007186;GO:0016020 K04284
gene-evm.TU.Chr17.926 rna-evm.model.Chr17.926 Chr17 27558112 27562155 PREDICTED: Calmodulin GO:0005509 K02183
gene-evm.TU.Chr17.927 rna-evm.model.Chr17.927 Chr17 27567866 27571088 PREDICTED: Beta-1,4-galactosyltransferase galt-1 nan K14434
gene-evm.TU.Chr17.928 rna-evm.model.Chr17.928 Chr17 27584565 27590800 PREDICTED: Calmodulin-like protein 3 GO:0005509 K02183
gene-evm.TU.Chr17.929 rna-evm.model.Chr17.929 Chr17 27598594 27602193 uncharacterized protein nan K00546
gene-evm.TU.Chr17.93 rna-evm.model.Chr17.93 Chr17 3231558 3251307 PREDICTED: Perlucin nan K06468
gene-evm.TU.Chr17.930 rna-evm.model.Chr17.930 Chr17 27613947 27629431 PREDICTED: Transcription factor E2F3 GO:0003700;GO:0005667;GO:0006355;GO:0046983 K09389
gene-evm.TU.Chr17.931 rna-evm.model.Chr17.931 Chr17 27636280 27653678 PREDICTED: Testicular haploid expressed gene protein-like nan nan
gene-evm.TU.Chr17.932 rna-evm.model.Chr17.932 Chr17 27668642 27717839 PREDICTED: Dyslexia-associated protein KIAA0319-like protein nan K24404
gene-evm.TU.Chr17.933 rna-evm.model.Chr17.933 Chr17 27749614 27761220 PREDICTED: Protein jagged-2 GO:0005509;GO:0007156;GO:0016020 K16506

For more detailed data, you can explore the Download section to access the full dataset.