CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr17.915 rna-evm.model.Chr17.915 Chr17 27239493 27246099 uncharacterized protein nan K13717
gene-evm.TU.Chr17.917 rna-evm.model.Chr17.917 Chr17 27277192 27284717 uncharacterized protein nan nan
gene-evm.TU.Chr17.918 rna-evm.model.Chr17.918 Chr17 27371777 27372172 uncharacterized protein nan K06449
gene-evm.TU.Chr17.919 rna-evm.model.Chr17.919.1 Chr17 27383297 27396283 PREDICTED: Clathrin light chain A GO:0005198;GO:0006886;GO:0016192;GO:0030130;GO:0030132 K04644
gene-evm.TU.Chr17.92 rna-evm.model.Chr17.92 Chr17 3218785 3221204 PREDICTED: Cholecystokinin receptor GO:0004930;GO:0007186;GO:0016020 K04194
gene-evm.TU.Chr17.920 rna-evm.model.Chr17.920 Chr17 27399263 27428557 PREDICTED: zinc finger CCCH domain-containing protein 13 nan K13087
gene-evm.TU.Chr17.921 rna-evm.model.Chr17.921 Chr17 27433775 27436128 uncharacterized protein nan nan
gene-evm.TU.Chr17.922 rna-evm.model.Chr17.922 Chr17 27472760 27490394 uncharacterized protein nan K08654
gene-evm.TU.Chr17.923 rna-evm.model.Chr17.923 Chr17 27496318 27496992 PREDICTED: reverse transcriptase family protein, partial nan nan
gene-evm.TU.Chr17.924 rna-evm.model.Chr17.924 Chr17 27516187 27528234 uncharacterized protein nan K08488

For more detailed data, you can explore the Download section to access the full dataset.