CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr17.903 rna-evm.model.Chr17.903 Chr17 26948097 26953567 PREDICTED: Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 GO:0016020;GO:0016757 K00731
gene-evm.TU.Chr17.904 rna-evm.model.Chr17.904 Chr17 26965168 26967941 PREDICTED: Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 GO:0016020;GO:0016757 K00731
gene-evm.TU.Chr17.905 rna-evm.model.Chr17.905 Chr17 26968251 26975704 uncharacterized protein nan nan
gene-evm.TU.Chr17.906 rna-evm.model.Chr17.906 Chr17 26980630 26987861 PREDICTED: Poly(U)-specific endoribonuclease GO:0004521;GO:0005044;GO:0006955;GO:0030247 K14648
gene-evm.TU.Chr17.907 rna-evm.model.Chr17.907 Chr17 26993359 27001547 PREDICTED: Alpha-amylase GO:0003824;GO:0005975;GO:0043169 K01176
gene-evm.TU.Chr17.908 rna-evm.model.Chr17.908 Chr17 27003533 27032605 PREDICTED: Alpha-amylase GO:0003824;GO:0005975;GO:0043169 K01176
gene-evm.TU.Chr17.909 rna-evm.model.Chr17.909 Chr17 27036546 27038528 PREDICTED: C3a anaphylatoxin chemotactic receptor GO:0004930;GO:0007186;GO:0016020 K04194
gene-evm.TU.Chr17.91 rna-evm.model.Chr17.91 Chr17 3210630 3212938 PREDICTED: Perlucin nan K10059
gene-evm.TU.Chr17.910 rna-evm.model.Chr17.910 Chr17 27076779 27115292 PREDICTED: Cephalotocin receptor 1 GO:0004930;GO:0007186;GO:0016020 K04194
gene-evm.TU.Chr17.913 rna-evm.model.Chr17.913 Chr17 27231547 27232899 PREDICTED: solute carrier family 23 (nucleobase transporter), member 1/2 GO:0003677 K20015

For more detailed data, you can explore the Download section to access the full dataset.