CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr17.891 rna-evm.model.Chr17.891 Chr17 26816600 26817306 uncharacterized protein nan K24129
gene-evm.TU.Chr17.892 rna-evm.model.Chr17.892 Chr17 26814024 26829456 PREDICTED: caspase 2 [EC:3.4.22.55] GO:0002020;GO:0042981;GO:0070513 K02832
gene-evm.TU.Chr17.894 rna-evm.model.Chr17.894 Chr17 26859190 26864857 PREDICTED: Death domain-containing protein CRADD GO:0042981 K02832
gene-evm.TU.Chr17.895 rna-evm.model.Chr17.895 Chr17 26874541 26880284 PREDICTED: Death domain-containing protein CRADD GO:0002020;GO:0042981;GO:0070513 K02832
gene-evm.TU.Chr17.896 rna-evm.model.Chr17.896 Chr17 26883390 26889155 PREDICTED: serine/threonine protein kinase, FIKK family nan K23561
gene-evm.TU.Chr17.897 rna-evm.model.Chr17.897 Chr17 26889312 26893889 PREDICTED: Caspase-2 GO:0002020;GO:0042981;GO:0070513 K02832
gene-evm.TU.Chr17.898 rna-evm.model.Chr17.898 Chr17 26895820 26898242 PREDICTED: Death domain-containing protein CRADD GO:0002020;GO:0042981;GO:0070513 K02832
gene-evm.TU.Chr17.9 rna-evm.model.Chr17.9 Chr17 510624 513014 PREDICTED: Mariner Mos1 transposase nan nan
gene-evm.TU.Chr17.90 rna-evm.model.Chr17.90 Chr17 3180609 3199357 PREDICTED: Potassium voltage-gated channel subfamily H member 7 GO:0005216;GO:0005249;GO:0006811;GO:0006813;GO:0016020;GO:0055085 K04910
gene-evm.TU.Chr17.901 rna-evm.model.Chr17.901 Chr17 26907854 26911705 PREDICTED: Coiled-coil domain-containing protein 73 nan K21347

For more detailed data, you can explore the Download section to access the full dataset.