CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr17.879 rna-evm.model.Chr17.879 Chr17 26615931 26628068 PREDICTED: Calmodulin GO:0005509 K02183
gene-evm.TU.Chr17.880 rna-evm.model.Chr17.880 Chr17 26644131 26683935 uncharacterized protein nan nan
gene-evm.TU.Chr17.881 rna-evm.model.Chr17.881 Chr17 26686438 26697968 PREDICTED: Squidulin GO:0005509 K02183
gene-evm.TU.Chr17.882 rna-evm.model.Chr17.882 Chr17 26699579 26714116 uncharacterized protein nan K20361
gene-evm.TU.Chr17.883 rna-evm.model.Chr17.883 Chr17 26717891 26719562 uncharacterized protein nan K10421
gene-evm.TU.Chr17.884 rna-evm.model.Chr17.884 Chr17 26726484 26731414 PREDICTED: Repetitive proline-rich cell wall protein 2 nan K08388
gene-evm.TU.Chr17.885 rna-evm.model.Chr17.885 Chr17 26749395 26758817 PREDICTED: CD151 antigen GO:0016020 K06537
gene-evm.TU.Chr17.886 rna-evm.model.Chr17.886 Chr17 26766395 26767697 uncharacterized protein nan K13458
gene-evm.TU.Chr17.887 rna-evm.model.Chr17.887 Chr17 26772973 26779645 PREDICTED: Death domain-containing protein CRADD GO:0042981 K02832
gene-evm.TU.Chr17.888 rna-evm.model.Chr17.888 Chr17 26783661 26788534 PREDICTED: CASP2 and RIPK1 domain containing adaptor with death domain GO:0002020;GO:0042981;GO:0070513 K02832

For more detailed data, you can explore the Download section to access the full dataset.