CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr17.864 rna-evm.model.Chr17.864 Chr17 26174765 26176364 PREDICTED: Iduronate 2-sulfatase GO:0008484 K01136
gene-evm.TU.Chr17.867 rna-evm.model.Chr17.867 Chr17 26203483 26208001 uncharacterized protein nan K24190
gene-evm.TU.Chr17.869 rna-evm.model.Chr17.869 Chr17 26234695 26250451 PREDICTED: E3 ubiquitin-protein ligase RNF19A GO:0004842;GO:0016567 K11972
gene-evm.TU.Chr17.87 rna-evm.model.Chr17.87 Chr17 2949345 2969217 PREDICTED: Beta-2 adrenergic receptor GO:0004930;GO:0007186;GO:0016020 K04202
gene-evm.TU.Chr17.870 rna-evm.model.Chr17.870 Chr17 26272272 26283958 PREDICTED: Carbohydrate sulfotransferase 11 GO:0008146;GO:0016020;GO:0016051 K09673
gene-evm.TU.Chr17.871 rna-evm.model.Chr17.871 Chr17 26290773 26299070 PREDICTED: UDP-glucose 4-epimerase nan K01784
gene-evm.TU.Chr17.872 rna-evm.model.Chr17.872 Chr17 26301020 26317033 PREDICTED: UDP-glucose 4-epimerase nan K01784
gene-evm.TU.Chr17.875 rna-evm.model.Chr17.875 Chr17 26550026 26568416 PREDICTED: Smoothened homolog GO:0004888;GO:0005515;GO:0007166;GO:0007224;GO:0016020;GO:0016020 K06226
gene-evm.TU.Chr17.876 rna-evm.model.Chr17.876 Chr17 26572990 26580717 PREDICTED: Protein eyes shut homolog GO:0005509 K20994
gene-evm.TU.Chr17.877_evm.TU.Chr17.878 rna-evm.model.Chr17.877_evm.model.Chr17.878 Chr17 26583119 26611996 PREDICTED: Protein eyes shut homolog GO:0005509 K19601

For more detailed data, you can explore the Download section to access the full dataset.