CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr17.851 rna-evm.model.Chr17.851 Chr17 26009722 26011716 uncharacterized protein nan K22804
gene-evm.TU.Chr17.852 rna-evm.model.Chr17.852 Chr17 26012202 26016361 uncharacterized protein nan nan
gene-evm.TU.Chr17.853 rna-evm.model.Chr17.853 Chr17 26016388 26017328 uncharacterized protein GO:0003676;GO:0008270 K09250
gene-evm.TU.Chr17.857 rna-evm.model.Chr17.857 Chr17 26032661 26033878 PREDICTED: Cholecystokinin receptor GO:0004930;GO:0007186;GO:0016020 K04194
gene-evm.TU.Chr17.858 rna-evm.model.Chr17.858 Chr17 26040171 26042684 PREDICTED: Cholecystokinin receptor GO:0004930;GO:0007186;GO:0016020 K04194
gene-evm.TU.Chr17.859 rna-evm.model.Chr17.859 Chr17 26070944 26081597 PREDICTED: Zinc finger protein 112 GO:0003676 K09191
gene-evm.TU.Chr17.86 rna-evm.model.Chr17.86 Chr17 2942697 2946459 PREDICTED: Adenosine receptor A2a GO:0004930;GO:0007186;GO:0016020 K04202
gene-evm.TU.Chr17.860 rna-evm.model.Chr17.860 Chr17 26112158 26124272 PREDICTED: probable transcription factor PML nan K18745
gene-evm.TU.Chr17.861 rna-evm.model.Chr17.861 Chr17 26141064 26144084 PREDICTED: Galactose-specific lectin nattectin nan K06468
gene-evm.TU.Chr17.862 rna-evm.model.Chr17.862 Chr17 26158748 26166149 uncharacterized protein nan K14774

For more detailed data, you can explore the Download section to access the full dataset.