CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr17.837 rna-evm.model.Chr17.837 Chr17 25750533 25752549 PREDICTED: Pogo transposable element with KRAB domain nan K22594
gene-evm.TU.Chr17.84 rna-evm.model.Chr17.84 Chr17 2826901 2842189 PREDICTED: Nuclear receptor subfamily 1 group D member 2 GO:0003677;GO:0003707;GO:0005634;GO:0006355 K03728
gene-evm.TU.Chr17.840 rna-evm.model.Chr17.840 Chr17 25804324 25809775 PREDICTED: solute carrier family 8 (sodium/calcium exchanger) nan nan
gene-evm.TU.Chr17.841 rna-evm.model.Chr17.841 Chr17 25811435 25812416 PREDICTED: P2X purinoceptor 7 nan K05220
gene-evm.TU.Chr17.842 rna-evm.model.Chr17.842 Chr17 25820377 25838078 uncharacterized protein nan nan
gene-evm.TU.Chr17.843 rna-evm.model.Chr17.843 Chr17 25843217 25851424 PREDICTED: leucine-rich repeat protein SHOC2 nan K06532
gene-evm.TU.Chr17.847 rna-evm.model.Chr17.847 Chr17 25924961 25958681 PREDICTED: Hemagglutinin/amebocyte aggregation factor nan K25512
gene-evm.TU.Chr17.848 rna-evm.model.Chr17.848 Chr17 25973484 25977935 PREDICTED: Complement C1q-like protein 3 nan K23284
gene-evm.TU.Chr17.849 rna-evm.model.Chr17.849 Chr17 25985876 25987063 uncharacterized protein nan nan
gene-evm.TU.Chr17.85 rna-evm.model.Chr17.85 Chr17 2849789 2855994 PREDICTED: Retinoic acid receptor alpha-A GO:0003677;GO:0003700;GO:0003707;GO:0005634;GO:0006355;GO:0008270;GO:0043565 K03728

For more detailed data, you can explore the Download section to access the full dataset.