CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr17.826 rna-evm.model.Chr17.826 Chr17 25532406 25558132 PREDICTED: Zinc finger C2HC domain-containing protein 1A nan K11365
gene-evm.TU.Chr17.827 rna-evm.model.Chr17.827 Chr17 25558283 25579542 PREDICTED: F-box only protein 9 GO:0005515 K10295
gene-evm.TU.Chr17.828 rna-evm.model.Chr17.828 Chr17 25591420 25592661 PREDICTED: Repetitive proline-rich cell wall protein 2 nan K18177
gene-evm.TU.Chr17.829 rna-evm.model.Chr17.829 Chr17 25594644 25594997 PREDICTED: E3 ubiquitin-protein ligase RFWD3 [EC:2.3.2.27] nan K10160
gene-evm.TU.Chr17.83 rna-evm.model.Chr17.83 Chr17 2807018 2807212 uncharacterized protein nan nan
gene-evm.TU.Chr17.832 rna-evm.model.Chr17.832 Chr17 25632026 25691956 PREDICTED: Zinc finger protein 32 GO:0003676 K09191
gene-evm.TU.Chr17.833 rna-evm.model.Chr17.833 Chr17 25701859 25704109 PREDICTED: Beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase GO:0008375;GO:0016020 K00727
gene-evm.TU.Chr17.834 rna-evm.model.Chr17.834 Chr17 25709308 25720398 PREDICTED: KRAB domain-containing zinc finger protein GO:0003676 K22535
gene-evm.TU.Chr17.835 rna-evm.model.Chr17.835 Chr17 25734949 25740643 PREDICTED: Hemagglutinin/amebocyte aggregation factor nan K25512
gene-evm.TU.Chr17.836 rna-evm.model.Chr17.836 Chr17 25745498 25750010 PREDICTED: Complement C1q-like protein 3 nan K23284

For more detailed data, you can explore the Download section to access the full dataset.