CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr17.817 rna-evm.model.Chr17.817 Chr17 24944013 24944765 PREDICTED: Neuropeptide SIFamide receptor GO:0004930;GO:0007186;GO:0016020 K04231
gene-evm.TU.Chr17.818 rna-evm.model.Chr17.818 Chr17 25102872 25103318 uncharacterized protein nan K25472
gene-evm.TU.Chr17.819 rna-evm.model.Chr17.819 Chr17 25135570 25179744 PREDICTED: G-protein coupled receptor GRL101 GO:0004930;GO:0005515;GO:0007186;GO:0016020 K04306
gene-evm.TU.Chr17.82 rna-evm.model.Chr17.82 Chr17 2793567 2794994 uncharacterized protein nan nan
gene-evm.TU.Chr17.820 rna-evm.model.Chr17.820 Chr17 25183798 25241363 uncharacterized protein GO:0005179;GO:0005576;GO:0007275 nan
gene-evm.TU.Chr17.821 rna-evm.model.Chr17.821 Chr17 25255346 25276536 PREDICTED: Protein krueppel GO:0003676 K24502
gene-evm.TU.Chr17.822 rna-evm.model.Chr17.822 Chr17 25296712 25312260 uncharacterized protein GO:0005515 K17586
gene-evm.TU.Chr17.823 rna-evm.model.Chr17.823 Chr17 25319981 25337289 PREDICTED: Arachidonate 5-lipoxygenase GO:0005515;GO:0016702;GO:0046872;GO:0055114 K00461
gene-evm.TU.Chr17.824 rna-evm.model.Chr17.824 Chr17 25345296 25388118 PREDICTED: Microtubule cross-linking factor 1 nan K21954
gene-evm.TU.Chr17.825 rna-evm.model.Chr17.825 Chr17 25489787 25520466 PREDICTED: Microtubule cross-linking factor 1 nan K03529

For more detailed data, you can explore the Download section to access the full dataset.