CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr17.802 rna-evm.model.Chr17.802 Chr17 24517232 24530961 PREDICTED: Protein FAM167A nan nan
gene-evm.TU.Chr17.805 rna-evm.model.Chr17.805 Chr17 24537491 24568148 PREDICTED: hairy and enhancer of split related with YRPW motif nan K27237
gene-evm.TU.Chr17.806 rna-evm.model.Chr17.806 Chr17 24616317 24619978 PREDICTED: Protein FAM167A nan K16759
gene-evm.TU.Chr17.808 rna-evm.model.Chr17.808 Chr17 24646546 24651418 PREDICTED: Calmodulin GO:0005509 K02183
gene-evm.TU.Chr17.809 rna-evm.model.Chr17.809 Chr17 24653386 24659015 PREDICTED: Lens fiber membrane intrinsic protein GO:0005244;GO:0005262;GO:0016020 K24190
gene-evm.TU.Chr17.81 rna-evm.model.Chr17.81 Chr17 2791503 2793538 uncharacterized protein nan K03912
gene-evm.TU.Chr17.810 rna-evm.model.Chr17.810 Chr17 24662893 24688612 PREDICTED: Prolyl endopeptidase GO:0004252;GO:0006508;GO:0008236;GO:0070008 K01322
gene-evm.TU.Chr17.811 rna-evm.model.Chr17.811 Chr17 24694986 24704372 PREDICTED: Hemagglutinin/amebocyte aggregation factor nan K25512
gene-evm.TU.Chr17.812 rna-evm.model.Chr17.812 Chr17 24712196 24713455 PREDICTED: Orexin receptor type 2 GO:0004930;GO:0007186;GO:0016020 K04238
gene-evm.TU.Chr17.816 rna-evm.model.Chr17.816 Chr17 24894003 24894224 uncharacterized protein nan nan

For more detailed data, you can explore the Download section to access the full dataset.