CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr17.79 rna-evm.model.Chr17.79 Chr17 2759067 2759497 uncharacterized protein nan nan
gene-evm.TU.Chr17.790 rna-evm.model.Chr17.790 Chr17 23431582 23437662 PREDICTED: Collectin-12 nan K06563
gene-evm.TU.Chr17.794 rna-evm.model.Chr17.794 Chr17 23784105 23787978 uncharacterized protein nan K13842
gene-evm.TU.Chr17.795 rna-evm.model.Chr17.795 Chr17 23793826 23800728 uncharacterized protein nan K00498
gene-evm.TU.Chr17.796 rna-evm.model.Chr17.796 Chr17 23907033 23907992 PREDICTED: Mariner Mos1 transposase nan nan
gene-evm.TU.Chr17.797 rna-evm.model.Chr17.797 Chr17 24130919 24134592 PREDICTED: Integrase/recombinase xerD homolog nan K04763
gene-evm.TU.Chr17.798 rna-evm.model.Chr17.798 Chr17 24185463 24246795 PREDICTED: Potassium voltage-gated channel subfamily KQT member 5 GO:0005216;GO:0005249;GO:0006811;GO:0006813;GO:0008076;GO:0016020;GO:0055085 K04930
gene-evm.TU.Chr17.8 rna-evm.model.Chr17.8 Chr17 485506 510014 PREDICTED: Glycoprotein 3-alpha-L-fucosyltransferase A GO:0006486;GO:0008417;GO:0016020 K14464
gene-evm.TU.Chr17.80 rna-evm.model.Chr17.80 Chr17 2784121 2786934 uncharacterized protein nan nan
gene-evm.TU.Chr17.800 rna-evm.model.Chr17.800 Chr17 24479885 24496706 PREDICTED: Histamine H1 receptor GO:0004930;GO:0007186;GO:0016020 K04238

For more detailed data, you can explore the Download section to access the full dataset.