CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr17.78 rna-evm.model.Chr17.78 Chr17 2756535 2757427 uncharacterized protein nan nan
gene-evm.TU.Chr17.780 rna-evm.model.Chr17.780 Chr17 23245607 23268957 PREDICTED: Probable protein arginine N-methyltransferase 6 GO:0006479;GO:0008168 K11437
gene-evm.TU.Chr17.781 rna-evm.model.Chr17.781 Chr17 23251563 23263869 PREDICTED: Tyrosyl-DNA phosphodiesterase 2 nan K19619
gene-evm.TU.Chr17.782 rna-evm.model.Chr17.782 Chr17 23280481 23291648 PREDICTED: Zinc finger protein 395 GO:0003676 K09208
gene-evm.TU.Chr17.783 rna-evm.model.Chr17.783 Chr17 23292302 23305544 PREDICTED: Protein cereblon homolog nan K11793
gene-evm.TU.Chr17.784 rna-evm.model.Chr17.784 Chr17 23316607 23327892 PREDICTED: Complement C1q-like protein 4 nan K23284
gene-evm.TU.Chr17.785 rna-evm.model.Chr17.785 Chr17 23331271 23334136 PREDICTED: Myosin regulatory light chain 12B GO:0005509 K12757
gene-evm.TU.Chr17.786 rna-evm.model.Chr17.786.1 Chr17 23339862 23378274 uncharacterized protein nan K26204
gene-evm.TU.Chr17.787 rna-evm.model.Chr17.787 Chr17 23415978 23416211 PREDICTED: Histone-lysine N-methyltransferase SETMAR nan K21406
gene-evm.TU.Chr17.789 rna-evm.model.Chr17.789 Chr17 23429824 23430791 PREDICTED: Hepatic lectin nan K06468

For more detailed data, you can explore the Download section to access the full dataset.