CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr17.769 rna-evm.model.Chr17.769 Chr17 23150456 23169401 PREDICTED: Sorting nexin-17 GO:0006886;GO:0035091 K17929
gene-evm.TU.Chr17.770 rna-evm.model.Chr17.770 Chr17 23172649 23175711 PREDICTED: Perlucin-like protein nan K06721
gene-evm.TU.Chr17.771 rna-evm.model.Chr17.771 Chr17 23184478 23185371 PREDICTED: Platelet-activating factor receptor GO:0016020 K04238
gene-evm.TU.Chr17.772 rna-evm.model.Chr17.772 Chr17 23189114 23190502 PREDICTED: S-antigen protein nan K16807
gene-evm.TU.Chr17.773 rna-evm.model.Chr17.773 Chr17 23190511 23191203 PREDICTED: S-antigen protein nan K16807
gene-evm.TU.Chr17.774 rna-evm.model.Chr17.774 Chr17 23193384 23203219 PREDICTED: Perlucin-like protein nan K06468
gene-evm.TU.Chr17.775 rna-evm.model.Chr17.775 Chr17 23205042 23206869 PREDICTED: Muscarinic acetylcholine receptor M1 GO:0004930;GO:0007186;GO:0016020 K04238
gene-evm.TU.Chr17.777 rna-evm.model.Chr17.777 Chr17 23216456 23217931 PREDICTED: Dvl-binding protein IDAX nan K22870
gene-evm.TU.Chr17.778 rna-evm.model.Chr17.778 Chr17 23221097 23223058 PREDICTED: E3 ubiquitin-protein ligase TRIM56 GO:0008270 K12026
gene-evm.TU.Chr17.779 rna-evm.model.Chr17.779 Chr17 23227636 23237564 PREDICTED: Probable iron/ascorbate oxidoreductase DDB_G0283291 GO:0016491;GO:0055114 K04125

For more detailed data, you can explore the Download section to access the full dataset.