CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr17.758 rna-evm.model.Chr17.758 Chr17 22724639 22725550 PREDICTED: Mariner Mos1 transposase nan K21406
gene-evm.TU.Chr17.759 rna-evm.model.Chr17.759 Chr17 22735576 22750928 PREDICTED: E3 ubiquitin-protein ligase UBR5 GO:0003723;GO:0004842 K10593
gene-evm.TU.Chr17.76 rna-evm.model.Chr17.76 Chr17 2726063 2755479 PREDICTED: matrilin-3 nan K19567
gene-evm.TU.Chr17.761 rna-evm.model.Chr17.761.1 Chr17 22786802 22847266 PREDICTED: E3 ubiquitin-protein ligase UBR5 GO:0003723;GO:0004842;GO:0008270;GO:0043130 K10593
gene-evm.TU.Chr17.763 rna-evm.model.Chr17.763 Chr17 22873061 22897140 PREDICTED: MFS-type transporter SLC18B1 GO:0016020;GO:0055085 K08161
gene-evm.TU.Chr17.764 rna-evm.model.Chr17.764 Chr17 22909063 22910500 PREDICTED: Neuromedin-U receptor 1 GO:0004930;GO:0007186;GO:0016020 K04238
gene-evm.TU.Chr17.765 rna-evm.model.Chr17.765 Chr17 22935843 22986237 PREDICTED: Cadherin-23 GO:0005509;GO:0007156;GO:0016020;GO:0098609 K16669
gene-evm.TU.Chr17.766 rna-evm.model.Chr17.766 Chr17 23033335 23038150 PREDICTED: protocadherin Fat 4 GO:0098609 K16669
gene-evm.TU.Chr17.767 rna-evm.model.Chr17.767 Chr17 23105070 23107398 uncharacterized protein nan K06719
gene-evm.TU.Chr17.768 rna-evm.model.Chr17.768 Chr17 23128202 23129065 PREDICTED: CD109 antigen nan K13856

For more detailed data, you can explore the Download section to access the full dataset.