CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr17.746 rna-evm.model.Chr17.746 Chr17 22380979 22382359 PREDICTED: Dehydrogenase/reductase SDR family member on chromosome X nan K11162
gene-evm.TU.Chr17.747 rna-evm.model.Chr17.747 Chr17 22386923 22389811 PREDICTED: WW domain-containing oxidoreductase nan K11162
gene-evm.TU.Chr17.749 rna-evm.model.Chr17.749 Chr17 22399337 22439466 PREDICTED: Protein argonaute-2 GO:0003676;GO:0005515 K11593
gene-evm.TU.Chr17.75 rna-evm.model.Chr17.75 Chr17 2712704 2720560 uncharacterized protein nan nan
gene-evm.TU.Chr17.750 rna-evm.model.Chr17.750 Chr17 22451194 22457324 PREDICTED: Protein LKAAEAR1 nan K14571
gene-evm.TU.Chr17.751 rna-evm.model.Chr17.751 Chr17 22463595 22468728 PREDICTED: Receptor-binding cancer antigen expressed on SiSo cells nan K22455
gene-evm.TU.Chr17.752 rna-evm.model.Chr17.752 Chr17 22472760 22490195 PREDICTED: Probable nuclear hormone receptor HR3 GO:0003677;GO:0003700;GO:0003707;GO:0005634;GO:0006355;GO:0008270;GO:0043565 K03728
gene-evm.TU.Chr17.753 rna-evm.model.Chr17.753 Chr17 22494162 22506929 PREDICTED: Nuclear receptor ROR-beta GO:0003677;GO:0003700;GO:0003707;GO:0005634;GO:0006355;GO:0008270;GO:0043565 K08533
gene-evm.TU.Chr17.754 rna-evm.model.Chr17.754 Chr17 22513303 22514543 PREDICTED: large subunit ribosomal protein L53 nan K17434
gene-evm.TU.Chr17.755 rna-evm.model.Chr17.755 Chr17 22519310 22550972 PREDICTED: Survival of motor neuron-related-splicing factor 30 GO:0003723;GO:0005634;GO:0005737;GO:0006397;GO:0042407;GO:0061617 K12839

For more detailed data, you can explore the Download section to access the full dataset.