CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr17.730 rna-evm.model.Chr17.730 Chr17 21771284 21822040 PREDICTED: Solute carrier organic anion transporter family member 4A1 GO:0005215;GO:0005515;GO:0016020;GO:0055085 K14354
gene-evm.TU.Chr17.731 rna-evm.model.Chr17.731 Chr17 22035233 22047181 PREDICTED: Zinc finger protein 800 GO:0003676 K23195
gene-evm.TU.Chr17.732 rna-evm.model.Chr17.732 Chr17 22048574 22050190 PREDICTED: Kelch domain-containing protein 9 GO:0005515 K20285
gene-evm.TU.Chr17.733 rna-evm.model.Chr17.733 Chr17 22056814 22058100 PREDICTED: Kelch domain-containing protein 9 GO:0005515 K10461
gene-evm.TU.Chr17.734 rna-evm.model.Chr17.734 Chr17 22062787 22073682 PREDICTED: Kelch-like protein 20 GO:0005515 K10457
gene-evm.TU.Chr17.74 rna-evm.model.Chr17.74 Chr17 2657726 2708087 PREDICTED: Arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 1 GO:0005096;GO:0005515 K12488
gene-evm.TU.Chr17.740 rna-evm.model.Chr17.740 Chr17 22098948 22106090 PREDICTED: Squidulin GO:0005509 K13448
gene-evm.TU.Chr17.742 rna-evm.model.Chr17.742 Chr17 22117628 22146103 PREDICTED: Calmodulin GO:0005509 K23852
gene-evm.TU.Chr17.743 rna-evm.model.Chr17.743 Chr17 22178436 22183765 PREDICTED: NLR family CARD domain-containing protein 3 nan K10631
gene-evm.TU.Chr17.745 rna-evm.model.Chr17.745 Chr17 22320710 22331983 PREDICTED: Calmodulin GO:0005509 K02183

For more detailed data, you can explore the Download section to access the full dataset.