CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr17.717 rna-evm.model.Chr17.717 Chr17 21520479 21521758 PREDICTED: Replicase polyprotein 1a nan K24496
gene-evm.TU.Chr17.718 rna-evm.model.Chr17.718 Chr17 21528115 21536229 PREDICTED: Putative riboflavin kinase nan K00861
gene-evm.TU.Chr17.72 rna-evm.model.Chr17.72.1 Chr17 2519573 2570102 PREDICTED: Regulating synaptic membrane exocytosis protein 2 GO:0005515;GO:0006886;GO:0006887;GO:0016020;GO:0031267 K15291
gene-evm.TU.Chr17.722 rna-evm.model.Chr17.722 Chr17 21575006 21576269 uncharacterized protein nan K05141
gene-evm.TU.Chr17.723 rna-evm.model.Chr17.723 Chr17 21580249 21591423 PREDICTED: Riboflavin kinase GO:0008531;GO:0009231 K00861
gene-evm.TU.Chr17.724 rna-evm.model.Chr17.724 Chr17 21594555 21609279 PREDICTED: Zinc finger and BTB domain-containing protein 7A GO:0003676 K09214
gene-evm.TU.Chr17.725 rna-evm.model.Chr17.725.1 Chr17 21613141 21618810 PREDICTED: Tubulin beta chain GO:0003924;GO:0005200;GO:0005525;GO:0005874;GO:0007017 K07375
gene-evm.TU.Chr17.726 rna-evm.model.Chr17.726 Chr17 21621347 21629467 PREDICTED: Tetratricopeptide repeat protein 32 GO:0005515 K24946
gene-evm.TU.Chr17.727 rna-evm.model.Chr17.727 Chr17 21638951 21650236 PREDICTED: U5 small nuclear ribonucleoprotein 40 kDa protein GO:0005515 K12857
gene-evm.TU.Chr17.73 rna-evm.model.Chr17.73 Chr17 2623463 2624938 uncharacterized protein nan nan

For more detailed data, you can explore the Download section to access the full dataset.