CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr17.692 rna-evm.model.Chr17.692 Chr17 21042257 21045939 PREDICTED: Collectin-12 nan K10064
gene-evm.TU.Chr17.693 rna-evm.model.Chr17.693 Chr17 21046880 21070708 PREDICTED: Tudor domain-containing protein 7 nan K18405
gene-evm.TU.Chr17.694 rna-evm.model.Chr17.694 Chr17 21075462 21093606 PREDICTED: Tudor domain-containing protein 7 nan K18407
gene-evm.TU.Chr17.695 rna-evm.model.Chr17.695 Chr17 21107212 21111589 PREDICTED: Activator of basal transcription 1 GO:0003676 K14785
gene-evm.TU.Chr17.696 rna-evm.model.Chr17.696 Chr17 21123531 21148805 PREDICTED: Calcium-dependent protein kinase 4 GO:0004672;GO:0005524;GO:0006468 K04466
gene-evm.TU.Chr17.697 rna-evm.model.Chr17.697 Chr17 21144273 21160518 PREDICTED: N-acylglucosamine 2-epimerase nan K01787
gene-evm.TU.Chr17.698 rna-evm.model.Chr17.698 Chr17 21162812 21204230 PREDICTED: Phosphatidylserine synthase 1 GO:0006659 K08729
gene-evm.TU.Chr17.7 rna-evm.model.Chr17.7 Chr17 324542 325399 PREDICTED: Myb-related transcription factor, partner of profilin GO:0005634;GO:0006915 K23221
gene-evm.TU.Chr17.701 rna-evm.model.Chr17.701 Chr17 21268854 21275940 PREDICTED: Perlucin-like protein nan K06468
gene-evm.TU.Chr17.703 rna-evm.model.Chr17.703 Chr17 21314926 21334513 PREDICTED: Integrin alpha-9 GO:0007155;GO:0008305 K06483

For more detailed data, you can explore the Download section to access the full dataset.