CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr17.679 rna-evm.model.Chr17.679 Chr17 20621259 20621414 uncharacterized protein nan nan
gene-evm.TU.Chr17.68 rna-evm.model.Chr17.68 Chr17 2433473 2441320 PREDICTED: Probable serine/threonine-protein kinase pats1 GO:0005515;GO:0007165 K08844
gene-evm.TU.Chr17.681 rna-evm.model.Chr17.681 Chr17 20647243 20648549 uncharacterized protein nan nan
gene-evm.TU.Chr17.683 rna-evm.model.Chr17.683 Chr17 20725560 20749518 PREDICTED: Rhomboid-related protein 2 GO:0004252;GO:0005509;GO:0016020 K02857
gene-evm.TU.Chr17.685 rna-evm.model.Chr17.685 Chr17 20772432 20806662 PREDICTED: Pumilio homolog 2 GO:0003723 K17943
gene-evm.TU.Chr17.688 rna-evm.model.Chr17.688 Chr17 20840513 20843426 PREDICTED: complement component 4 nan K26174
gene-evm.TU.Chr17.689 rna-evm.model.Chr17.689 Chr17 20848115 20857079 uncharacterized protein nan K04870
gene-evm.TU.Chr17.69 rna-evm.model.Chr17.69 Chr17 2480737 2492379 PREDICTED: Glucosidase 2 subunit beta GO:0006491 K08288
gene-evm.TU.Chr17.690 rna-evm.model.Chr17.690 Chr17 20867673 20989904 PREDICTED: Kinesin-like protein KIF13A GO:0003777;GO:0005515;GO:0005524;GO:0007018;GO:0008017;GO:0072383 K17914
gene-evm.TU.Chr17.691 rna-evm.model.Chr17.691 Chr17 20996038 21037220 PREDICTED: Kinesin-like protein KIF13A nan K17914

For more detailed data, you can explore the Download section to access the full dataset.