CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr17.653 rna-evm.model.Chr17.653 Chr17 19574669 19575814 PREDICTED: ankyrin nan K03006
gene-evm.TU.Chr17.654 rna-evm.model.Chr17.654 Chr17 19598641 19600733 PREDICTED: Transposable element Tcb2 transposase GO:0003677;GO:0006313;GO:0015074 K07499
gene-evm.TU.Chr17.656 rna-evm.model.Chr17.656 Chr17 19746460 19750524 uncharacterized protein nan nan
gene-evm.TU.Chr17.658 rna-evm.model.Chr17.658 Chr17 19770390 19796835 PREDICTED: BCLAF1 and THRAP3 family member 3 nan K13171
gene-evm.TU.Chr17.66 rna-evm.model.Chr17.66 Chr17 2387200 2390402 PREDICTED: Solute carrier family 12 member 8 nan K14428
gene-evm.TU.Chr17.660 rna-evm.model.Chr17.660 Chr17 19847483 19853824 uncharacterized protein nan K06501
gene-evm.TU.Chr17.661 rna-evm.model.Chr17.661 Chr17 19871631 19874853 PREDICTED: melanocyte protein PMEL nan K06501
gene-evm.TU.Chr17.662 rna-evm.model.Chr17.662 Chr17 19882825 19891795 PREDICTED: tripartite motif-containing protein 56 [EC:2.3.2.27] GO:0008270 K12026
gene-evm.TU.Chr17.663 rna-evm.model.Chr17.663 Chr17 19926243 19928235 PREDICTED: Ig-like V-type domain-containing protein FAM187A nan K06756
gene-evm.TU.Chr17.664 rna-evm.model.Chr17.664 Chr17 19974084 19974902 PREDICTED: solute carrier family 15, member 5 nan K07497

For more detailed data, you can explore the Download section to access the full dataset.