CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr17.63 rna-evm.model.Chr17.63 Chr17 2348585 2355153 PREDICTED: EF-hand domain-containing protein 1 GO:0016020 K24190
gene-evm.TU.Chr17.630 rna-evm.model.Chr17.630 Chr17 18882973 18886210 PREDICTED: Octopamine receptor beta-2R GO:0004930;GO:0007186;GO:0016020 K04194
gene-evm.TU.Chr17.631 rna-evm.model.Chr17.631 Chr17 18890385 18904190 PREDICTED: Tetratricopeptide repeat protein 38 nan K24942
gene-evm.TU.Chr17.632 rna-evm.model.Chr17.632 Chr17 18910302 18924184 PREDICTED: Extracellular serine/threonine protein kinase FAM20C nan K21958
gene-evm.TU.Chr17.633 rna-evm.model.Chr17.633 Chr17 18927991 19004104 PREDICTED: Extracellular serine/threonine protein kinase FAM20C nan K21958
gene-evm.TU.Chr17.634 rna-evm.model.Chr17.634 Chr17 19009069 19015423 PREDICTED: zinc finger CCCH domain-containing protein 13 nan K06087
gene-evm.TU.Chr17.637 rna-evm.model.Chr17.637 Chr17 19082462 19100159 PREDICTED: Coagulation factor VIII nan K17253
gene-evm.TU.Chr17.639 rna-evm.model.Chr17.639 Chr17 19112493 19154019 PREDICTED: Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1 nan K24469
gene-evm.TU.Chr17.64 rna-evm.model.Chr17.64 Chr17 2355845 2359605 PREDICTED: EF-hand domain-containing protein 1 GO:0016020 K24190
gene-evm.TU.Chr17.640 rna-evm.model.Chr17.640 Chr17 19176126 19220538 PREDICTED: G-protein coupled receptor GRL101 GO:0004930;GO:0005515;GO:0007186;GO:0016020;GO:0016500 K04307

For more detailed data, you can explore the Download section to access the full dataset.