CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr17.619 rna-evm.model.Chr17.619 Chr17 18502791 18515428 uncharacterized protein nan K23168
gene-evm.TU.Chr17.62 rna-evm.model.Chr17.62 Chr17 2325880 2340115 PREDICTED: RAD52 motif-containing protein 1 nan K10874
gene-evm.TU.Chr17.621 rna-evm.model.Chr17.621 Chr17 18543868 18551464 uncharacterized protein nan nan
gene-evm.TU.Chr17.622 rna-evm.model.Chr17.622 Chr17 18555779 18567535 uncharacterized protein nan K27101
gene-evm.TU.Chr17.623 rna-evm.model.Chr17.623 Chr17 18629502 18651782 uncharacterized protein nan K24613
gene-evm.TU.Chr17.624 rna-evm.model.Chr17.624 Chr17 18736313 18755079 PREDICTED: NLR family CARD domain-containing protein 3 nan K15177
gene-evm.TU.Chr17.626 rna-evm.model.Chr17.626 Chr17 18787292 18788386 PREDICTED: Carbohydrate sulfotransferase 9 GO:0008146;GO:0016020;GO:0016051 K09672
gene-evm.TU.Chr17.627 rna-evm.model.Chr17.627 Chr17 18791669 18793651 PREDICTED: tripartite motif-containing protein 56 [EC:2.3.2.27] nan K12026
gene-evm.TU.Chr17.628 rna-evm.model.Chr17.628 Chr17 18796485 18804792 PREDICTED: Zinc finger protein mnm-2 GO:0003676 K24502
gene-evm.TU.Chr17.629 rna-evm.model.Chr17.629 Chr17 18825786 18862487 PREDICTED: Protocadherin Fat 1 GO:0005509;GO:0007156;GO:0016020 K04600

For more detailed data, you can explore the Download section to access the full dataset.