CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr17.590 rna-evm.model.Chr17.590.2 Chr17 17707607 17753515 PREDICTED: RNA-binding protein 38 GO:0003676 K25006
gene-evm.TU.Chr17.592 rna-evm.model.Chr17.592 Chr17 17870874 17871254 uncharacterized protein nan nan
gene-evm.TU.Chr17.597 rna-evm.model.Chr17.597 Chr17 17916877 17969707 PREDICTED: Adenylyl cyclase-associated protein 1 GO:0003779;GO:0007010 K17261
gene-evm.TU.Chr17.598 rna-evm.model.Chr17.598 Chr17 17979090 17981977 PREDICTED: exportin-T GO:0005515 K10273
gene-evm.TU.Chr17.599 rna-evm.model.Chr17.599 Chr17 17982566 17988470 PREDICTED: Histone-lysine N-methyltransferase PRDM16 GO:0003676 K09214
gene-evm.TU.Chr17.6 rna-evm.model.Chr17.6 Chr17 320431 322379 PREDICTED: Putative nuclease HARBI1 nan K23222
gene-evm.TU.Chr17.60 rna-evm.model.Chr17.60 Chr17 2298795 2303868 PREDICTED: Cytochrome b-c1 complex subunit 7 GO:0005750;GO:0006122 K00417
gene-evm.TU.Chr17.600 rna-evm.model.Chr17.600 Chr17 18001722 18007028 uncharacterized protein nan K16499
gene-evm.TU.Chr17.601 rna-evm.model.Chr17.601 Chr17 18007206 18011659 PREDICTED: 60S ribosomal protein L11 GO:0003735;GO:0005840;GO:0006412 K02868
gene-evm.TU.Chr17.602 rna-evm.model.Chr17.602 Chr17 18017097 18031592 PREDICTED: Dynein regulatory complex protein 1 GO:0005858;GO:0070286 K19754

For more detailed data, you can explore the Download section to access the full dataset.