CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr17.603 rna-evm.model.Chr17.603 Chr17 18043484 18068942 PREDICTED: Insulin receptor substrate 1 GO:0005158;GO:0008286 K16172
gene-evm.TU.Chr17.604 rna-evm.model.Chr17.604 Chr17 18076710 18110487 PREDICTED: Transcription factor GATA-4 GO:0003700;GO:0006355;GO:0008270;GO:0043565 K09183
gene-evm.TU.Chr17.605 rna-evm.model.Chr17.605 Chr17 18112871 18114719 PREDICTED: kielin/chordin-like protein nan K24521
gene-evm.TU.Chr17.606 rna-evm.model.Chr17.606 Chr17 18116764 18119012 PREDICTED: cysteine-rich motor neuron 1 protein nan K24521
gene-evm.TU.Chr17.607 rna-evm.model.Chr17.607 Chr17 18119771 18120954 PREDICTED: von Willebrand factor C domain-containing protein 2-like nan K24521
gene-evm.TU.Chr17.608 rna-evm.model.Chr17.608 Chr17 18122030 18164260 PREDICTED: Transmembrane protein 47 GO:0016020 K24190
gene-evm.TU.Chr17.609 rna-evm.model.Chr17.609 Chr17 18171323 18218992 PREDICTED: Calmodulin GO:0005509 K02183
gene-evm.TU.Chr17.61 rna-evm.model.Chr17.61 Chr17 2308109 2318340 PREDICTED: Oocyte zinc finger protein XlCOF6.1 (Fragment) GO:0003676 K09230
gene-evm.TU.Chr17.614 rna-evm.model.Chr17.614 Chr17 18443612 18447622 uncharacterized protein nan nan
gene-evm.TU.Chr17.616 rna-evm.model.Chr17.616.1 Chr17 18462166 18469652 PREDICTED: cAMP-responsive element-binding protein-like 2 GO:0003700;GO:0006355 K04450

For more detailed data, you can explore the Download section to access the full dataset.