CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr17.58 rna-evm.model.Chr17.58 Chr17 2291820 2292239 uncharacterized protein nan K25226
gene-evm.TU.Chr17.580 rna-evm.model.Chr17.580 Chr17 17220840 17222064 PREDICTED: histone-lysine N-methyltransferase SETMAR-like nan nan
gene-evm.TU.Chr17.581 rna-evm.model.Chr17.581 Chr17 17330325 17337292 PREDICTED: Cholecystokinin receptor type A GO:0004930;GO:0007186;GO:0016020 K04194
gene-evm.TU.Chr17.582 rna-evm.model.Chr17.582 Chr17 17378586 17379122 PREDICTED: Exodeoxyribonuclease III nan K26653
gene-evm.TU.Chr17.583 rna-evm.model.Chr17.583 Chr17 17379164 17380359 PREDICTED: trichohyalin nan nan
gene-evm.TU.Chr17.585 rna-evm.model.Chr17.585 Chr17 17515075 17515905 PREDICTED: PU-F1 nan K19467
gene-evm.TU.Chr17.586 rna-evm.model.Chr17.586 Chr17 17541897 17543857 PREDICTED: PU-F1 nan K19467
gene-evm.TU.Chr17.587 rna-evm.model.Chr17.587 Chr17 17545490 17550807 PREDICTED: CUB and sushi domain-containing protein nan K24428
gene-evm.TU.Chr17.588 rna-evm.model.Chr17.588 Chr17 17635974 17639206 PREDICTED: solute carrier family 15, member 5 GO:0015074 K07497
gene-evm.TU.Chr17.589 rna-evm.model.Chr17.589 Chr17 17645037 17665410 PREDICTED: apoptosis-resistant E3 ubiquitin protein ligase 1 [EC:2.3.2.26] GO:0004842 K22371

For more detailed data, you can explore the Download section to access the full dataset.