CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr17.552 rna-evm.model.Chr17.552 Chr17 16371333 16373292 PREDICTED: Perlucin-like protein nan K06721
gene-evm.TU.Chr17.553 rna-evm.model.Chr17.553 Chr17 16374699 16376061 PREDICTED: Quinone reductase GO:0016491 K19784
gene-evm.TU.Chr17.554 rna-evm.model.Chr17.554 Chr17 16381876 16383363 uncharacterized protein nan K13445
gene-evm.TU.Chr17.555 rna-evm.model.Chr17.555 Chr17 16424132 16431818 PREDICTED: P-selectin nan K10064
gene-evm.TU.Chr17.556 rna-evm.model.Chr17.556 Chr17 16472013 16472846 PREDICTED: Transposon TX1 uncharacterized 149 kDa protein nan K01142
gene-evm.TU.Chr17.557 rna-evm.model.Chr17.557 Chr17 16555857 16557772 PREDICTED: dopamine receptor D2 GO:0016020 K04194
gene-evm.TU.Chr17.559 rna-evm.model.Chr17.559 Chr17 16578168 16715146 PREDICTED: DENN domain-containing protein 3 GO:0005515 K20162
gene-evm.TU.Chr17.560_evm.TU.Chr17.562 rna-evm.model.Chr17.560_evm.model.Chr17.562 Chr17 16578110 16819836 PREDICTED: DENN domain-containing protein 3 GO:0005515 K20162
gene-evm.TU.Chr17.561 rna-evm.model.Chr17.561 Chr17 16760452 16764495 PREDICTED: Phospholipase A and acyltransferase 4 nan K23266
gene-evm.TU.Chr17.563 rna-evm.model.Chr17.563 Chr17 16824941 16834702 PREDICTED: Bystin nan K14797

For more detailed data, you can explore the Download section to access the full dataset.