CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr17.539 rna-evm.model.Chr17.539 Chr17 15971169 16001085 PREDICTED: Gamma-aminobutyric acid type B receptor subunit 2 GO:0004930;GO:0004965;GO:0007186;GO:0016020 K04615
gene-evm.TU.Chr17.54 rna-evm.model.Chr17.54 Chr17 2218004 2226710 PREDICTED: protection of telomeres protein 1 nan nan
gene-evm.TU.Chr17.541 rna-evm.model.Chr17.541 Chr17 16040636 16071506 PREDICTED: Uncharacterized protein C8orf34 homolog nan nan
gene-evm.TU.Chr17.546 rna-evm.model.Chr17.546.1 Chr17 16164292 16203978 PREDICTED: Potassium voltage-gated channel protein Shaw GO:0005216;GO:0005249;GO:0005515;GO:0006811;GO:0006813;GO:0008076;GO:0016020;GO:0051260;GO:0055085 K04887
gene-evm.TU.Chr17.547 rna-evm.model.Chr17.547 Chr17 16212917 16213081 PREDICTED: Sal-like protein 2 GO:0003676 K19871
gene-evm.TU.Chr17.548 rna-evm.model.Chr17.548.1 Chr17 16296467 16323472 PREDICTED: Krueppel-like factor 13 GO:0003676 K10495
gene-evm.TU.Chr17.549 rna-evm.model.Chr17.549 Chr17 16317238 16318947 PREDICTED: Zinc finger protein 862 GO:0046983 K24642
gene-evm.TU.Chr17.55 rna-evm.model.Chr17.55 Chr17 2243914 2282572 PREDICTED: Trafficking protein particle complex subunit 9 nan K20306
gene-evm.TU.Chr17.550 rna-evm.model.Chr17.550 Chr17 16325785 16352141 PREDICTED: Low-density lipoprotein receptor GO:0005515 K20049
gene-evm.TU.Chr17.551 rna-evm.model.Chr17.551 Chr17 16361469 16368400 PREDICTED: Collectin-12 nan K06468

For more detailed data, you can explore the Download section to access the full dataset.