CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr17.527 rna-evm.model.Chr17.527 Chr17 15660669 15661322 PREDICTED: Paternally-expressed gene 3 protein nan K01532
gene-evm.TU.Chr17.528 rna-evm.model.Chr17.528 Chr17 15656242 15712999 PREDICTED: Coiled-coil domain-containing protein 60 nan K25818
gene-evm.TU.Chr17.53 rna-evm.model.Chr17.53 Chr17 2198250 2217913 uncharacterized protein nan nan
gene-evm.TU.Chr17.530 rna-evm.model.Chr17.530 Chr17 15751756 15763295 PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial GO:0010181;GO:0016651;GO:0051287;GO:0051539;GO:0055114 K03942
gene-evm.TU.Chr17.531 rna-evm.model.Chr17.531 Chr17 15771347 15798806 PREDICTED: Nucleolar transcription factor 1 nan K09273
gene-evm.TU.Chr17.532 rna-evm.model.Chr17.532 Chr17 15807881 15815554 PREDICTED: Calmodulin GO:0005509 K02183
gene-evm.TU.Chr17.533 rna-evm.model.Chr17.533 Chr17 15840953 15842180 PREDICTED: Neuronal acetylcholine receptor subunit alpha-2 nan K27079
gene-evm.TU.Chr17.534 rna-evm.model.Chr17.534 Chr17 15847677 15858647 PREDICTED: Enoyl-CoA hydratase domain-containing protein 3, mitochondrial GO:0003824 K01715
gene-evm.TU.Chr17.535 rna-evm.model.Chr17.535 Chr17 15861562 15879247 PREDICTED: Platelet-activating factor acetylhydrolase GO:0003847;GO:0016042 K01062
gene-evm.TU.Chr17.536 rna-evm.model.Chr17.536 Chr17 15893991 15924499 PREDICTED: Gamma-aminobutyric acid type B receptor subunit 2 GO:0004930;GO:0004965;GO:0007186;GO:0016020 K04615

For more detailed data, you can explore the Download section to access the full dataset.