CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr17.488 rna-evm.model.Chr17.488 Chr17 14863976 14870272 PREDICTED: Ras-related protein Rab-20 GO:0003924;GO:0005525 K07911
gene-evm.TU.Chr17.49 rna-evm.model.Chr17.49 Chr17 2008728 2009606 PREDICTED: Vitelline membrane outer layer protein 1 nan K25745
gene-evm.TU.Chr17.491 rna-evm.model.Chr17.491 Chr17 14972733 14982678 PREDICTED: male-specific lethal 1 GO:0005515;GO:0007165 K08332
gene-evm.TU.Chr17.493 rna-evm.model.Chr17.493 Chr17 14997869 15003115 PREDICTED: CUB and sushi domain-containing protein nan nan
gene-evm.TU.Chr17.494 rna-evm.model.Chr17.494 Chr17 15011158 15018168 PREDICTED: IgGFc-binding protein nan nan
gene-evm.TU.Chr17.499 rna-evm.model.Chr17.499 Chr17 15141335 15142624 PREDICTED: Interferon-induced very large GTPase 1 nan K12797
gene-evm.TU.Chr17.5 rna-evm.model.Chr17.5 Chr17 256181 291147 PREDICTED: Serine/threonine-protein kinase 11-interacting protein nan nan
gene-evm.TU.Chr17.502 rna-evm.model.Chr17.502 Chr17 15163839 15175299 PREDICTED: Hydroxymethylglutaryl-CoA lyase, mitochondrial GO:0003824 K01640
gene-evm.TU.Chr17.503 rna-evm.model.Chr17.503 Chr17 15177832 15185327 PREDICTED: 33 kDa inner dynein arm light chain, axonemal nan K10410
gene-evm.TU.Chr17.504 rna-evm.model.Chr17.504 Chr17 15185422 15197948 PREDICTED: ER membrane protein complex subunit 2-A GO:0005515 K23563

For more detailed data, you can explore the Download section to access the full dataset.