CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr17.505 rna-evm.model.Chr17.505 Chr17 15201457 15210620 PREDICTED: 3-hydroxypropionyl-coenzyme A dehydratase GO:0003824 K01692
gene-evm.TU.Chr17.506 rna-evm.model.Chr17.506 Chr17 15267874 15280947 PREDICTED: Leucine-rich repeat-containing protein 14B nan K10268
gene-evm.TU.Chr17.507 rna-evm.model.Chr17.507 Chr17 15281164 15295652 PREDICTED: DnaJ homolog subfamily B member 5 nan K09517
gene-evm.TU.Chr17.508 rna-evm.model.Chr17.508 Chr17 15311576 15363612 PREDICTED: Unconventional myosin-X GO:0003774;GO:0005524;GO:0006355;GO:0016459 K08834
gene-evm.TU.Chr17.509 rna-evm.model.Chr17.509 Chr17 15371700 15376053 PREDICTED: Elongation factor 1-alpha GO:0003924;GO:0005525 K03231
gene-evm.TU.Chr17.51 rna-evm.model.Chr17.51 Chr17 2053423 2083154 uncharacterized protein nan K07133
gene-evm.TU.Chr17.510 rna-evm.model.Chr17.510 Chr17 15381283 15385727 PREDICTED: 28S ribosomal protein S14, mitochondrial GO:0003735;GO:0005840;GO:0006412 K02954
gene-evm.TU.Chr17.511 rna-evm.model.Chr17.511 Chr17 15389836 15390771 PREDICTED: cadherin 2, type 1, N-cadherin nan nan
gene-evm.TU.Chr17.512 rna-evm.model.Chr17.512 Chr17 15395202 15402075 PREDICTED: Epidermal retinol dehydrogenase 2 nan K15734
gene-evm.TU.Chr17.513 rna-evm.model.Chr17.513 Chr17 15404500 15430423 PREDICTED: Epidermal retinol dehydrogenase 2 nan K15734

For more detailed data, you can explore the Download section to access the full dataset.