CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr17.475 rna-evm.model.Chr17.475 Chr17 14034496 14037408 uncharacterized protein nan K07358
gene-evm.TU.Chr17.476 rna-evm.model.Chr17.476 Chr17 14065463 14113622 PREDICTED: CUB and sushi domain-containing protein nan K11244
gene-evm.TU.Chr17.478 rna-evm.model.Chr17.478 Chr17 14124236 14156872 PREDICTED: CUB and sushi domain-containing protein nan nan
gene-evm.TU.Chr17.479 rna-evm.model.Chr17.479 Chr17 14166260 14199970 PREDICTED: IgGFc-binding protein nan nan
gene-evm.TU.Chr17.48 rna-evm.model.Chr17.48 Chr17 1989229 1998082 PREDICTED: Vitelline membrane outer layer protein 1 nan K25745
gene-evm.TU.Chr17.482 rna-evm.model.Chr17.482 Chr17 14323170 14324714 PREDICTED: FMRFamide receptor GO:0004930;GO:0007186;GO:0008528;GO:0016020 K26202
gene-evm.TU.Chr17.483 rna-evm.model.Chr17.483 Chr17 14530512 14533912 PREDICTED: glucuronyl/N-acetylglucosaminyl transferase EXT1 [EC:2.4.1.224 2.4.1.225] nan K21601
gene-evm.TU.Chr17.484 rna-evm.model.Chr17.484 Chr17 14559097 14566772 PREDICTED: Ficolin-2 nan K25409
gene-evm.TU.Chr17.486 rna-evm.model.Chr17.486 Chr17 14727091 14728527 PREDICTED: Protein ANTAGONIST OF LIKE HETEROCHROMATIN PROTEIN 1 nan K23222
gene-evm.TU.Chr17.487 rna-evm.model.Chr17.487.1 Chr17 14794114 14810024 uncharacterized protein nan nan

For more detailed data, you can explore the Download section to access the full dataset.