CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr17.452 rna-evm.model.Chr17.452 Chr17 13524372 13529046 PREDICTED: C1q-related factor nan K23284
gene-evm.TU.Chr17.453 rna-evm.model.Chr17.453 Chr17 13531479 13532579 PREDICTED: collagen, type VIII, alpha nan K23284
gene-evm.TU.Chr17.454 rna-evm.model.Chr17.454 Chr17 13536040 13539216 PREDICTED: collagen, type VIII, alpha nan K23284
gene-evm.TU.Chr17.455 rna-evm.model.Chr17.455 Chr17 13542025 13544068 PREDICTED: collagen, type VIII, alpha nan K24236
gene-evm.TU.Chr17.458 rna-evm.model.Chr17.458 Chr17 13637821 13640141 PREDICTED: Zinc finger protein 862 GO:0046983 K24642
gene-evm.TU.Chr17.46 rna-evm.model.Chr17.46 Chr17 1962949 1975908 PREDICTED: Solute carrier organic anion transporter family member 2B1 GO:0005215;GO:0005515;GO:0016020;GO:0055085 K14352
gene-evm.TU.Chr17.463 rna-evm.model.Chr17.463 Chr17 13649667 13650323 uncharacterized protein nan K03196
gene-evm.TU.Chr17.468 rna-evm.model.Chr17.468 Chr17 13654846 13656081 PREDICTED: Uncharacterized protein F54H12.2 GO:0055114 nan
gene-evm.TU.Chr17.47 rna-evm.model.Chr17.47 Chr17 1979511 1982240 PREDICTED: Vitelline membrane outer layer protein 1 nan K25745
gene-evm.TU.Chr17.471 rna-evm.model.Chr17.471 Chr17 13687151 13687731 uncharacterized protein nan nan

For more detailed data, you can explore the Download section to access the full dataset.