CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr17.443 rna-evm.model.Chr17.443 Chr17 13326928 13342191 PREDICTED: chitinase [EC:3.2.1.14] nan K03933
gene-evm.TU.Chr17.444 rna-evm.model.Chr17.444 Chr17 13344449 13346684 PREDICTED: chitinase [EC:3.2.1.14] nan nan
gene-evm.TU.Chr17.445 rna-evm.model.Chr17.445 Chr17 13348149 13349455 uncharacterized protein nan K05099
gene-evm.TU.Chr17.446 rna-evm.model.Chr17.446 Chr17 13350219 13354270 PREDICTED: chitinase [EC:3.2.1.14] nan K00516
gene-evm.TU.Chr17.447 rna-evm.model.Chr17.447 Chr17 13360752 13366364 PREDICTED: chitinase [EC:3.2.1.14] nan nan
gene-evm.TU.Chr17.448 rna-evm.model.Chr17.448 Chr17 13367336 13369590 PREDICTED: chitinase [EC:3.2.1.14] nan nan
gene-evm.TU.Chr17.449 rna-evm.model.Chr17.449 Chr17 13371010 13414356 PREDICTED: C-type lectin domain family 4 member F nan K10058
gene-evm.TU.Chr17.45 rna-evm.model.Chr17.45 Chr17 1942839 1960120 uncharacterized protein nan nan
gene-evm.TU.Chr17.450 rna-evm.model.Chr17.450 Chr17 13428826 13432786 PREDICTED: zinc finger CCCH domain-containing protein 13 nan K16839
gene-evm.TU.Chr17.451 rna-evm.model.Chr17.451 Chr17 13435000 13517836 PREDICTED: cyclin-dependent kinase 12-like nan K21902

For more detailed data, you can explore the Download section to access the full dataset.